Computational Biology: abril 2016

BIOLOGY

Stochastic resonance

In biological systems, introducing stochastic "noise" has been found to help improve the signal strength of the internal feedback loops for balance and othervestibular communication.^[6] It has been found to help diabetic and stroke patients with balance control.^[7] Many biochemical events also lend themselves to stochastic analysis. Gene expression, for example, has a stochastic component through the molecular collisions — as during binding and unbinding of RNA polymerase to a gene promoter — via the solution's Brownian motion.

https://es.wikipedia.org/wiki/Biodiversidad

COMPUTATION

Stochastic ray tracing is the application of Monte Carlo simulation to the computer graphics ray tracing algorithm. "Distributed ray tracing samples the integrand at many randomly chosen points and averages the results to obtain a better approximation. It is essentially an application of the Monte Carlo method to 3D computer graphics, and for this reason is also called Stochastic ray tracing."^{[citation needed]}

Stochastic forensics analyzes computer crime by viewing computers as stochastic processes.

COMPUTATIONAL BIOLOGY

https://en.wikipedia.org/wiki/Computational_biology
https://en.wikipedia.org/wiki/Computational_genomics

Molecular structure generator
http://www.molgen.de/products.html

UNIANDES
https://sistemas.uniandes.edu.co/es/mbc-academico/perfiles-investigacion

IIITD
https://www.iiitd.ac.in/education/mtech/cb

BIOINFORMATICS

http://www.bioinformatics.org/

https://en.wikipedia.org/wiki/Bioinformatics
https://en.wikipedia.org/wiki/Biochemistry

JAVA
BioJava - An open source project dedicated to provide Java tools for processing biological data. BioJava's goal is to create an API that automates common bioinformatics tasks while providing a foundation for bioinformatics-based software projects.
Link: https://github.com/biojava
caBio (Cancer Bioinformatics Infrastructure Objects) is one component of the National Cancer Institute's Centre for Bioinformatics (NCICB), caCORE research management system. The caBio API contains the implementations of various biomedical objects to facilitate consistent data representation and data integration projects.
ENSJ is the Java implementation of the EnsEMBL driver and data adaptors. ENSJ allows a developer to access sequence or annotation information stored in the EnsEMBL database. Recently, a new prototype API, called MartJ, has been developed and allows the developers to access EnsEMBL's Mart database that focuses on the fast and flexible multi-organism data-mining.
Phylogenetic Analysis Library (PAL) is a Java API dedicated to the subset of bioinformatics analysis that pertains to the evolutionary development of genomes (DNA and protein sequence). Kalpana Raja / Indian Journal of Computer Science and Engineering (IJCSE) ISSN : 0976-5166 Vol. 2 No. 6 Dec 2011-Jan 2012 955
KDOM - The Knowledge Discovery Object Model (KDOM) is a bioinformatics-based API designed to represent and manage biological knowledge during application development. • MAGE-stk is an example of a bioinformatics-based API that provides a Java representation of the information required to describe a particular experiment such as a microarray experiment.

UNAL
http://bioinf.ibun.unal.edu.co/documentos.php

Computational Biology

jueves, 28 de abril de 2016

Computational Biology

BIG DATA

miércoles, 27 de abril de 2016

DISCRETE MATHS

Computational Discrete Mathematics: Combinatorics and Graph Theory with Mathematica

NUMBERING SYSTEM

ALGORITHMS

COMPUTATIONAL BIOLOGY AND BIOINFORMATICS